Microbiology of Extremophiles
Files corresponding to CCODE (Chimera and Cross-Over DEtection).
What to download. For the Unix/Linux operating systems you should download the files ccode25.tar and the corresponding ClustalW version (UNIX).
For the Windows/DOS operating systems you should download the files ccode025w.exe (windows version) and the corresponding ClustalW files for your system.
Ccode for UNIX/Linux. Tar file containing: ccode025 executable (Linux Red Hat v. 9.0), ccode025.c (source code), Readme.1st (manual; text file) and run_ccode025 (a shell script requiring clustalw).
Ccode for windows/dos. Zip file containing an executable ccode025 version for windows/dos platforms and some brief installation instructions.
ClustalW 1.83 for UNIX. Compressed (tar) file containing clustalW1.83 for Unix (including Linux).
ClustalW 1.83 for DOS and Windows (excluding XP). Compressed (zip) file containing clustalW1.83 for Windows/DOS platforms (excluding Windows XP).
ClustalW 1.83 for Windows XP. Compressed (zip) file containing clustalW1.83 only for the Windows XP operating system.
Coming soon. We are currently preparing a program (Blent) to automatize the process of searching for homologue sequences to a query (using Blast and Entrez at NCBI), alignment (using ClustalW), and chimera detection (using Ccode). This improvement will allow quick and automated analysis of sequences.
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